PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn243861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family G2-like
Protein Properties Length: 322aa    MW: 35022.1 Da    PI: 5.7117
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn243861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.25e-30154207155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Achn243861 154 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 207
                 59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-19151211IPR009057Homeodomain-like
PROSITE profilePS5129410.061151210IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-30153212IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23155207IPR006447Myb domain, plants
PfamPF002495.6E-8157206IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGEEVRMREY DGVDDDGCAG DDGRVSEWEV GLPNADDLTP LSQPLIPPEL ASAFSISPEP  60
CRSMIDVNRA SQNTLSSIRG ESQALSSSSN FKFKSFSEDR AKDGVVVEGD EADLVRDGSD  120
PRKVRRIDGG AEEVDSALGA ENGGDDPSAR TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV  180
PKTIMQLMNV EGLTRENVAS HLQKYRLYLK RMQGLSSEGP SSSDHLFAST PVPQSLHESG  240
GSGNGHVAMP IPMPYPPQMM SYHMPVMGMA HGHGHMGMPV GNPGSYHGFE SHPYNMVQQR  300
DWSGNKFDSV ASYPHVTPND K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-21153212463ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256853.11e-156PREDICTED: transcription factor PCL1
SwissprotQ9SNB44e-92PCL1_ARATH; Transcription factor LUX
TrEMBLF6GUZ01e-151F6GUZ0_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g05120.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35802343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-82G2-like family protein